PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G1949
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 295aa    MW: 33335.2 Da    PI: 8.1667
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G1949genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-082873346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT++E + + +a +++ ++   +W ++a++++ g+t  +++  ++ 
      Gh_A01G1949 28 KWTPQENKCFENALALYDKDtpdRWFKVAAMIP-GKTVGDVIKQYRE 73
                     8********************************.******9999986 PP

2Myb_DNA-binding47.34.8e-15136180347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
      Gh_A01G1949 136 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 180
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.0242479IPR017884SANT domain
SMARTSM007176.2E-102577IPR001005SANT/Myb domain
SuperFamilySSF466894.02E-112781IPR009057Homeodomain-like
CDDcd001672.16E-72874No hitNo description
PfamPF002492.3E-72873IPR001005SANT/Myb domain
PROSITE profilePS5129420.447129185IPR017930Myb domain
SuperFamilySSF466891.64E-17131184IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-17132184IPR006447Myb domain, plants
SMARTSM007172.1E-13133183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-13133180IPR009057Homeodomain-like
PfamPF002491.9E-12136180IPR001005SANT/Myb domain
CDDcd001671.98E-11136181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MNRGLEILSP ASYLQTSNWL FQESKGTKWT PQENKCFENA LALYDKDTPD RWFKVAAMIP  60
GKTVGDVIKQ YRELEEDVSD IEAGLIPIPG YSSDSFTLEW VNDGQVFDGF RNYYYTPGGK  120
RGTGTRPDQE RKKGVPWTEE EHRQFLMGLK KYGKGDWRNI SRNFVTTRTP TQVASHAQKY  180
FIRQVTGGKD KRRSSIHDIT TVNIPDTISS SPDQSKPLSP SNSSTVMQPQ QQPKATSVTK  240
EVLDFEWNQR NEGAAIIFDQ TSSGNALLSP YCGMISSYGP QFGSYNALFQ SMQHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-162693875RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.47700.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468479.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-106DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0B0N8310.0A0A0B0N831_G
STRINGPOPTR_0016s11980.11e-150(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-120MYB family protein